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If you are performing a downgrade (1.1.4 to 1.1.3, for example), this is normal.
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Updating r version

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You can just install and load packages from the specified directory.Finally, I have some small code included in my allowing me to reinstall all packages when I install a new R version.Andrew Gelman recently lamented the lack of an easy upgrade process for R (probably more relevant on Windows than Linux).Does anyone have a good trick for doing the upgrade, from installing the software to copying all the settings/packages over?

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Upgrading it on Windows was easy peasy, not like the headache Ubuntu gave me.

I recently got a Dell Vostro 14 3000 series laptop with Ubuntu 12.04 installed. Anyway, I tried installing by typing the following on Terminal: R did get installed, but not the latest version. I later found out after quite a lot of time spent on Stack Exchange, that I had to choose a CRAN mirror that was geographically close to my computer, which would then act as a “software source” for the latest version of R.

I haven’t yet upgraded to Ubuntu 14.04 because the graphics drivers for this computer aren’t available for that version. Now explained why the above sudo commands weren’t getting me the desired version of software.

This suggestion was contained in the comments and is what I've been using recently.

First you install the new version, then run this in the old verion: variable, and will make it the default.